Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015890911.1_cds_XP_016445607.1_40553
CDS Infomation

[gene=LOC107770788] [db_xref=GeneID:107770788] [protein=probable WRKY transcription factor 42] [protein_id=XP_016445607.1] [location=join(108873..109241,109508..109606,109691..110215,110302..110415,110776..111462)] [gbkey=CDS]
Sequence

ATGGCCAATGGTAGTGGACTCTCTTTTGATCCAGATCCCATCAAACACTTCCTTCCTTTT
CTTCAACCTACAAAATTATTCAACTTTCAACCTTTGTTAACATCAATGGAGTCTTCACCT
TATAAAAACAGGTCACCACCTTCTACTATTCAATTCCCAGTTAACCTTAACTGCTCAAAT
ACTGATCATAATCAAGAAGAAGAAGAGCAGAAAATTAGACCAGTTATTGATGAAATGGAC
TTTTTTGCTGATCATAAAAAAGATGGTAGTAATTCTGAGGAACCTGCAACAACAGCTAAT
AATACTGCTGTGGACACTGAAAGAAAAGAATCCAACACCCCTCCTCCTGAATTGGATTTT
AACATTAATACTGGTTTGCATCTTCTCACTGCAAATACTTATAGCGATCAGTCCATAGTA
GAAGATGGCTTATCCCCTAACTCTGAAGATAAAAGAACCAAGAATGAGTTAGCAGTTCTT
CAAGCTGAACTGGAAAGAATGAATGGCGAAAATCGACGTTTAAAGGACATGTTAAATCAG
GCGACGAACAATTATAGTAACCTCCACATGCAAATGATGACAATGATACAGCAACAACAA
CATCAAGAAAATGATCAACACGACGGGAAAAGTGAAGAAGTGAGACAACAAATTCAGAGC
AAAAATGGCCATGGAGGAGGAGGACAAATAGTGCCTAGGCAATTTATGGATCTTGGCCTA
GCAGCTGCCACTGGTTCTGAAGCAGAAGAGACTTCTCTGTCTTCGTCGGAGGGGCGAAGT
GGAAGGGATAAATCACGATCACCAACGAATAATATGGAATCAGGTTCAACATGTGGAATT
GTAAGAGAAGATAGTCCTGAAAAAGGTTCACCTGGTTGGGGTCCTAATAAAATTCCAAGA
CTTGGCAATGGCTCTAAAAGTACTGATCAAGCTACTGAGGCTACTATGAGAAAGGCTCGT
GTCTCGGTCAGGGCTCGATCAGAGGCTCCCATGATCACAGATGGTTGCCAATGGCGGAAG
TATGGACAGAAAATGGCGAAGGGAAATCCGTGTCCTCGGGCTTATTACCGATGCACCATG
GCAGCTGGTTGCCCAGTTCGGAAGCAAGTTCAAAGATGTGCAGAGGACAGAACAATATTG
ATCACAACTTATGAAGGAACTCACAACCATCCATTACCTCCAGCAGCAATGGCAATGGCG
TCGACAACGTCCTCAGCAGCAAGAATGTTGCTTTCAGGTTCAATGCCAAGTGCAGATGGA
CTAATGAATTCCAATTTCTTTGCCAGAACTTTACTCCCTTGTTCCTCTAGCATGGCTACA
ATTTCTGCCTCCGCGCCATTTCCTACTGTTACATTGGACCTAACTCAATCCCCGAACCCT
TTGCAATTTCCAAGATCCCCTAACCAATTCCAAGTCCCATTCTCAAATCCACCCCACAAT
ATGTTATCAAATCCAGCTGCACTTTTGCCTCAGATATTTAACCAGGCTTTATATAACCAA
TCCAAATTTTCAGGCCTACAATTGTCTCAAGATTCGGAAGGACAGAACCCTTCAACATTG
CCATCGTCGATTCATCAATCCAACCACAACCCTTTGGCTGATACAGTGAATGCTCTCACT
GCTGATCCTAACTTCACAGCAGCATTAGCAGCAGCCATCACTTCCCTTATTGGAAATCCT
CAGCAACCAAACAATGGTAGTACTAACAATACTACTGCTATCACAACGACCGCCAACAAC
CAAAACAGCAGTGTCACAACCAATGGCAATAACACCAGCAATGGCAACCAATAA

Peptide Sequence

PEP ID

XP_016445607.1
PEP Infomation

PREDICTED: probable WRKY transcription factor 42 [Nicotiana tabacum]
Sequence

MANGSGLSFDPDPIKHFLPFLQPTKLFNFQPLLTSMESSPYKNRSPPSTIQFPVNLNCSN
TDHNQEEEEQKIRPVIDEMDFFADHKKDGSNSEEPATTANNTAVDTERKESNTPPPELDF
NINTGLHLLTANTYSDQSIVEDGLSPNSEDKRTKNELAVLQAELERMNGENRRLKDMLNQ
ATNNYSNLHMQMMTMIQQQQHQENDQHDGKSEEVRQQIQSKNGHGGGGQIVPRQFMDLGL
AAATGSEAEETSLSSSEGRSGRDKSRSPTNNMESGSTCGIVREDSPEKGSPGWGPNKIPR
LGNGSKSTDQATEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTM
AAGCPVRKQVQRCAEDRTILITTYEGTHNHPLPPAAMAMASTTSSAARMLLSGSMPSADG
LMNSNFFARTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPRSPNQFQVPFSNPPHN
MLSNPAALLPQIFNQALYNQSKFSGLQLSQDSEGQNPSTLPSSIHQSNHNPLADTVNALT
ADPNFTAALAAAITSLIGNPQQPNNGSTNNTTAITTTANNQNSSVTTNGNNTSNGNQ

Transcript Sequence

Gene sequence data has not been registered.